October 2, 2008 in Nation/World

Analysis dates AIDS virus to 1900

Study ‘backtracks’ HIV mutation rate
By Mary Engel Los Angeles Times
 

A genetic analysis of a biopsy sample recently discovered in the Democratic Republic of the Congo has led researchers to conclude that the virus that causes AIDS has existed in human populations for more than a century, according to a study released Wednesday.

The study, led by evolutionary biologist Michael Worobey of the University of Arizona in Tucson, puts the date of origin at around 1900, 30 years earlier than previous analyses.

HIV-1, the most common form of the virus, is known to have originated in chimpanzees because of close genetic similarities to a simian virus. It now infects an estimated 33 million worldwide.

But figuring out when the virus jumped species and became established in humans has been difficult. The first cases in the U.S. were only recognized in 1981, and the oldest evidence of the virus is a 1959 blood sample taken from a man who lived in what was then the Belgian Congo.

To find the point of origin, the scientists relied on a well-recognized genetic technique to determine the mutation rates of different sub-types of the virus.

With a known rate of mutation, researchers could then, in essence, run the clock backward to find the point where the different sub-types were the same. That common ancestor would represent the first appearance of the virus in humans before it began to mutate.

“The HIV virus evolves incredibly quickly,” said geneticist Bette Korber of Los Alamos National Laboratory in New Mexico, who did an analysis in 2000. “Those mutations get passed on to the next individual. So we have that evolutionary pace to enable a look backward.”

Korber’s analysis compared the 1959 blood sample and modern samples. She traced their common ancestor to roughly 1931.

The new analysis, published in the journal Nature on Wednesday, added lymph node tissue from a woman who died in 1960 in the Belgian Congo. The tissue specimen was one of more than 800 preserved in ice-cube-size blocks of paraffin at the University of Kinshasa.

The researchers compared that sample with modern strains to determine its mutation rate. Then they matched that rate with the 1959 sample’s, tracing their common ancestor to between 1884 and 1924.

“I’ve been trying to track down old samples like this for quite a few years now,” Worobey said. “As soon as you have that one other sequence from that same time period, it really snaps the whole evolutionary picture into sharp focus.”

The researchers surmised that the creation of colonial cities around the turn of the century was the catalyst that allowed the virus to take hold.

Dr. Steven M. Wolinsky, a co-author of the study, said cities meant not just more potential hosts for viruses living in closer quarters but prostitution and other high-risk behaviors for transmitting the virus.

“Urbanization was probably the main trigger,” said Wolinsky, an infectious disease specialist at the Feinberg School of Medicine at Northwestern University in Chicago.

Get stories like this in a free daily email


Please keep it civil. Don't post comments that are obscene, defamatory, threatening, off-topic, an infringement of copyright or an invasion of privacy. Read our forum standards and community guidelines.

You must be logged in to post comments. Please log in here or click the comment box below for options.

comments powered by Disqus